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| author | Justin Bedo <cu@cua0.org> | 2018-12-20 15:23:22 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-12-20 15:23:22 +1100 |
| commit | fd497e038d6fe72cef476600496c70aa135ef297 (patch) | |
| tree | 573278e1c90b2f8e10b118803ec1934aaee3eb8e | |
| parent | 4aaf973ac64e284f7408aed208debde6eb36d756 (diff) | |
README: add tnpair example to examples section
| -rw-r--r-- | README.md | 6 |
1 files changed, 5 insertions, 1 deletions
@@ -9,12 +9,16 @@ documentation is sparse. Install [Nix](http://nixos.org/nix) and then try `nix-build` in the examples directory. -## Example pipeline +## Example pipelines The examples directory shows a simple pipeline in the call.nix and default.nix files. You can build it with `nix-build` in the examples directory. The result will be linked to ./result, which in this example case is an empty VCF file. +There is another tumour-normal pipeline calling example consisting of `tnpair` +and `tnpair.nix`. In this case, the shell script tnpair accepts a reference and +two fastq files to run the pipeline defined in `tnpair.nix` on. + ## Contact Please come chat with us at [#bionix:cua0.org](http://matrix.to/#/#bionix:cua0.org). |