aboutsummaryrefslogtreecommitdiff
path: root/default.nix
diff options
context:
space:
mode:
authorJustin Bedo <cu@cua0.org>2019-01-10 12:20:51 +1100
committerJustin Bedo <cu@cua0.org>2019-01-10 12:20:51 +1100
commit9a70a25d6b7771df7ca53fcc34d61f582296e384 (patch)
tree5de101f321f25fe48f4b3cbfd24103c5d84b8104 /default.nix
parent5cb6f6001ea3aefd52ebaf42c1714343d51a8822 (diff)
facets: init
Diffstat (limited to 'default.nix')
-rw-r--r--default.nix3
1 files changed, 2 insertions, 1 deletions
diff --git a/default.nix b/default.nix
index 3ed2b50..0c2f9ad 100644
--- a/default.nix
+++ b/default.nix
@@ -18,6 +18,7 @@ let
cnvkit = callBionix ./tools/cnvkit.nix {};
compression = callBionix ./tools/compression.nix {};
crumble = callBionix ./tools/crumble.nix {};
+ facets = callBionix ./tools/facets.nix {};
fastqc = callBionix ./tools/fastqc.nix {};
gridss = callBionix ./tools/gridss.nix {};
infercnv = callBionix ./tools/infercnv.nix {};
@@ -25,10 +26,10 @@ let
mosdepth = callBionix ./tools/mosdepth.nix {};
mutect = callBionix ./tools/mutect.nix {};
platypus = callBionix ./tools/platypus.nix {};
+ ref = callBionix ./lib/references.nix {};
samtools = callBionix ./tools/samtools.nix {};
snpeff = callBionix ./tools/snpeff.nix {};
strelka = callBionix ./tools/strelka.nix {};
- ref = callBionix ./lib/references.nix {};
qsub = attrs: bionix.extend (self: super: with self; rec {
qsubDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; tmpDir = "/tmp"; sleepTime = 60; } // attrs;