diff options
author | Justin Bedo <cu@cua0.org> | 2019-01-10 12:20:51 +1100 |
---|---|---|
committer | Justin Bedo <cu@cua0.org> | 2019-01-10 12:20:51 +1100 |
commit | 9a70a25d6b7771df7ca53fcc34d61f582296e384 (patch) | |
tree | 5de101f321f25fe48f4b3cbfd24103c5d84b8104 /default.nix | |
parent | 5cb6f6001ea3aefd52ebaf42c1714343d51a8822 (diff) |
facets: init
Diffstat (limited to 'default.nix')
-rw-r--r-- | default.nix | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/default.nix b/default.nix index 3ed2b50..0c2f9ad 100644 --- a/default.nix +++ b/default.nix @@ -18,6 +18,7 @@ let cnvkit = callBionix ./tools/cnvkit.nix {}; compression = callBionix ./tools/compression.nix {}; crumble = callBionix ./tools/crumble.nix {}; + facets = callBionix ./tools/facets.nix {}; fastqc = callBionix ./tools/fastqc.nix {}; gridss = callBionix ./tools/gridss.nix {}; infercnv = callBionix ./tools/infercnv.nix {}; @@ -25,10 +26,10 @@ let mosdepth = callBionix ./tools/mosdepth.nix {}; mutect = callBionix ./tools/mutect.nix {}; platypus = callBionix ./tools/platypus.nix {}; + ref = callBionix ./lib/references.nix {}; samtools = callBionix ./tools/samtools.nix {}; snpeff = callBionix ./tools/snpeff.nix {}; strelka = callBionix ./tools/strelka.nix {}; - ref = callBionix ./lib/references.nix {}; qsub = attrs: bionix.extend (self: super: with self; rec { qsubDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; tmpDir = "/tmp"; sleepTime = 60; } // attrs; |