diff options
author | Justin Bedo <cu@cua0.org> | 2019-06-18 09:56:29 +1000 |
---|---|---|
committer | Justin Bedo <cu@cua0.org> | 2019-06-18 09:56:29 +1000 |
commit | ff8a11320db7131e488423e103937a342b82e652 (patch) | |
tree | aeb2ed503e7017149d53535a2e5328657180219a /default.nix | |
parent | 27d69830a9475253c239ada6c161a938c52c01f8 (diff) |
slurm: fix bug with srun
salloc must call srun to actually launch job on execution node rather
than submission node
Diffstat (limited to 'default.nix')
-rw-r--r-- | default.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/default.nix b/default.nix index a0ecce0..9bc7b6c 100644 --- a/default.nix +++ b/default.nix @@ -38,7 +38,7 @@ let fastp = callBionix ./tools/fastp.nix {}; slurm = attrs: bionix.extend (self: super: with self; rec { - slurmDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; salloc = "/usr/bin/salloc"; } // attrs; + slurmDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; salloc = "/usr/bin/salloc"; srun = "/usr/bin/srun"; } // attrs; slurm = attrs: (callPackage ./lib/slurm.nix {}) (slurmDefs // attrs); exec = f: x: y: slurm (builtins.intersectAttrs slurmDefs x) (super.exec f (builtins.removeAttrs x (builtins.attrNames slurmDefs)) y); }); |