refactor, add mosdepth, and fixes for bwa

1 files changed, 18 insertions, 0 deletions

diff --git a/references.nix b/references.nix
new file mode 100644
index 0000000..e7f1c7a
--- /dev/null
+++ b/references.nix
@@ -0,0 +1,18 @@
+{ bionix, nixpkgs }:
+
+with nixpkgs;
+
+rec {
+  grch38 = grch38-p12;
+  grch38-p12 = {
+    seq = stdenv.mkDerivation rec {
+        name = "seq-grch38.${version}";
+        version = "p12";
+        src = fetchurl {
+          url = "ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_28/GRCh38.p12.genome.fa.gz";
+          sha256 = "0ji2ggpmgnbpwbhq8mirj6h3lyy02nl2rnz7n892iq5cqpsblh4z";
+        };
+        buildCommand = "gunzip < $src > $out";
+      };
+  };
+}