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| author | Justin Bedo <cu@cua0.org> | 2019-06-21 10:07:29 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-06-21 10:42:30 +1000 |
| commit | 2ad72c4c3d33f685297ecdeb799a91afae2dccb5 (patch) | |
| tree | aa6ab7bb45a73b4cf76709eb277dccca2e4b69f1 /test-tnpair.nix | |
| parent | 7231886ee52379de001ae830ed76a09be556ac57 (diff) | |
bwa-mem2: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 0e13338..76fcfab 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -62,6 +62,8 @@ let (ln tnpairResult.variants.snvs "strelka.snvs.vcf") (ln tnpairResult.glvariants.variants "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") + (ln (bwa.mem {inherit ref;} tnpair.normal.files) "alignments/bwa-mem.bam") + (ln (bwa.mem2 {inherit ref;} tnpair.normal.files) "alignments/bwa-mem2.bam") (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") |