diff options
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 0e13338..76fcfab 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -62,6 +62,8 @@ let (ln tnpairResult.variants.snvs "strelka.snvs.vcf") (ln tnpairResult.glvariants.variants "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") + (ln (bwa.mem {inherit ref;} tnpair.normal.files) "alignments/bwa-mem.bam") + (ln (bwa.mem2 {inherit ref;} tnpair.normal.files) "alignments/bwa-mem2.bam") (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") |