diff options
| author | Justin Bedo <cu@cua0.org> | 2022-05-16 12:46:12 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2022-05-16 13:07:24 +1000 |
| commit | 2bd2c3958ed91ef3bbea2fc3e077a8c03a648a1b (patch) | |
| tree | 8d12d5f861a0ef6194fdd055586527ab998b151e /test-tnpair.nix | |
| parent | 61a05c73159f4578322ba9a59ab8ee7a5f1fb1b4 (diff) | |
quip: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 679cc67..169d531 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -98,6 +98,7 @@ let snver = snver.call { ploidy = 1; } tnpairResult.alignments; mosdepth = mosdepth.plot { } { inputs = mapAttrsToList (_: mosdepth.depth { }) tnpairResult.alignments; names = [ "seq1" "seq2" ]; }; xenomapper = xenomapper.allocate { } { primary = nameSort tnpairResult.alignments.tumour; secondary = nameSort tnpairResult.alignments.tumour; }; + quip = with quip; unquip {} (quip {} tnpairResult.alignments.tumour); genmap = genmap.calcmap { } ref; inherit alignments; }; |