diff options
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 679cc67..169d531 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -98,6 +98,7 @@ let snver = snver.call { ploidy = 1; } tnpairResult.alignments; mosdepth = mosdepth.plot { } { inputs = mapAttrsToList (_: mosdepth.depth { }) tnpairResult.alignments; names = [ "seq1" "seq2" ]; }; xenomapper = xenomapper.allocate { } { primary = nameSort tnpairResult.alignments.tumour; secondary = nameSort tnpairResult.alignments.tumour; }; + quip = with quip; unquip {} (quip {} tnpairResult.alignments.tumour); genmap = genmap.calcmap { } ref; inherit alignments; }; |