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author | Justin Bedo <cu@cua0.org> | 2018-09-24 14:12:37 +1000 |
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committer | Justin Bedo <cu@cua0.org> | 2018-09-24 14:12:37 +1000 |
commit | 45af0256cf75fa28e75b6cf6874df0c48aac38cf (patch) | |
tree | f9848df3114486aae2528717dad17d56caf8d372 /test-tnpair.nix | |
parent | 9c99509719704112c786c194f715c64aaa5b03de (diff) |
use a map in the test pipeline
Diffstat (limited to 'test-tnpair.nix')
-rw-r--r-- | test-tnpair.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 40cb442..b3a41cb 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -13,7 +13,7 @@ let normal = {name = "mysample2"; files = {input1 = ./example/sample2-1.fq; input2 = ./example/sample2-1.fq;};};}; processPair = { tumour, normal }: rec { - alignments = { normal = sort(alignWithRG normal.name normal.files); tumour = sort (alignWithRG tumour.name tumour.files); }; + alignments = mapAttrs (_: x: sort (alignWithRG x.name x.files)) { inherit normal tumour; }; variants = callVariants alignments; }; |