diff options
| author | Justin Bedo <cu@cua0.org> | 2019-08-16 09:34:30 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-09-06 10:15:13 +1000 |
| commit | 6d22c07e9b0e8254da360b73bfab58b110118c58 (patch) | |
| tree | cd97ba4d48ca53210dd057d8e0a637fbaa19e7e3 /test-tnpair.nix | |
| parent | f361afeab23a4e7b74e0f58bb64b142f6bc3652b (diff) | |
xenomapper: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 701748d..bb356b2 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -87,6 +87,7 @@ let "${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files; snver = snver.call { ploidy=1; } tnpairResult.alignments; mosdepth = mosdepth.plot {} { inputs = mapAttrsToList (_: mosdepth.depth {}) tnpairResult.alignments; names = [ "seq1" "seq2" ]; }; + xenomapper = xenomapper.allocate {} { primary = nameSort tnpairResult.alignments.tumour; secondary = nameSort tnpairResult.alignments.tumour; }; inherit alignments; }; |