diff options
| author | Justin Bedo <cu@cua0.org> | 2019-09-06 10:59:14 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-09-06 10:59:45 +1000 |
| commit | 84d273e9ab9c02b3da3c4ec53f7e5bcb6f780030 (patch) | |
| tree | 5e9357ab9f294c599b1314039d33baa40eb83fc5 /test-tnpair.nix | |
| parent | 233c5f9a09ba82e94b042ac22462dcdfa8ffbae2 (diff) | |
test: disable strelka somatic test
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index bb356b2..3601a13 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -71,11 +71,10 @@ let "cnvkit.pdf" = cnvkitResults.plot; "octopus.vcf" = tnpairResult.octopusVars; "octopus-somatic.vcf" = tnpairResult.octopusSomatic; - strelka = tnpairResult.variants; - strelka-gl = tnpairResult.glvariants; - strelka-indels = tnpairResult.variants.indels; - "strelka.snvs.vcf" = tnpairResult.variants.snvs; - "strelka.gl.vcf" = tnpairResult.glvariants.variants; + #strelka = tnpairResult.variants; + #strelka-indels = tnpairResult.variants.indels; + #"strelka.snvs.vcf" = tnpairResult.variants.snvs; + "strelka.gl.vcf" = tnpairResult.glvariants; gridss = gridss.callVariants {} (with tnpairResult.alignments; [normal tumour]); gridss2 = gridss.call (with tnpairResult.alignments; [normal tumour]); gridss3 = gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour]); |