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| author | Justin Bedo <cu@cua0.org> | 2019-04-30 09:47:49 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-04-30 09:47:49 +1000 |
| commit | a1d18efc18772a233aa759b622c3a9960824f109 (patch) | |
| tree | c8e4028b4b634cfe7002c79539563256894e0d48 /test-tnpair.nix | |
| parent | e9b908b0cdc22a7b43301e63a23c7911aa371721 (diff) | |
cleanup examples and stray files
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index cd8620a..1d281fa 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -49,8 +49,8 @@ let (ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf") (ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") - (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") - (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") + #(ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") + #(ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") (ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2") (ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3") |