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| author | Justin Bedo <cu@cua0.org> | 2018-10-04 14:20:31 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-10-04 14:20:31 +1000 |
| commit | b51c2989b0d354ab96077c6af559dc20c026d42f (patch) | |
| tree | 90b67ba7164214a0c0a4fba40f55c9bc4182e7d8 /test-tnpair.nix | |
| parent | 30d47b54b1e1ca63fb4a3bce26cc51a7b6017e23 (diff) | |
Refactor references
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index f8c49ec..3260b7b 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -14,7 +14,7 @@ in with bionix; let - ref = ./example/ref.fa; + ref = { seq = ./example/ref.fa; }; alignWithRG = rg: bwa.align { inherit ref; flags = "-R'@RG\\tID:${rg}\\tSM:${rg}'";}; sort = samtools.sort {}; flagstat = samtools.flagstat {}; |