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| author | Justin Bedo <cu@cua0.org> | 2019-12-16 20:43:04 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-12-16 20:45:31 +1100 |
| commit | c48e7b40c82326006136463282b803eebc648df0 (patch) | |
| tree | 82542735f10c3909e79ecf99923f9fb13cd4d833 /test-tnpair.nix | |
| parent | 352425b6065d752cd065fda5fbcd4b8d253d4626 (diff) | |
manta: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index f320f58..49c9bb9 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -74,6 +74,9 @@ let strelka-indels = tnpairResult.variants.indels; "strelka.snvs.vcf" = tnpairResult.variants.snvs; "strelka.gl.vcf" = tnpairResult.glvariants; + manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; }); + mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;}); + mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;}); gridss = gridss.callVariants {} (with tnpairResult.alignments; [normal tumour]); gridss2 = gridss.call (with tnpairResult.alignments; [normal tumour]); gridss3 = gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour]); |