diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
---|---|---|
committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/ascat.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/ascat.nix')
-rw-r--r-- | tools/ascat.nix | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tools/ascat.nix b/tools/ascat.nix index 700cb4e..142e0d9 100644 --- a/tools/ascat.nix +++ b/tools/ascat.nix @@ -1,17 +1,17 @@ -{bionix}: +{ bionix }: with bionix; { - app = pkgs.callPackage ./ascat-app.nix {}; + app = pkgs.callPackage ./ascat-app.nix { }; /* Generate GC correction file for ascatNGS. - Type: gccorrect :: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC) + Type: gccorrect :: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC) */ gccorrect = callBionixE ./ascat-gccorrect.nix; /* Call CNVs using ascatNGS. Gender is a string as per ascatNGS docs (e.g., "XX"). - Type: callCNV :: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs + Type: callCNV :: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs */ callCNV = callBionixE ./ascat-callCNV.nix; } |