diff options
Diffstat (limited to 'tools/ascat.nix')
| -rw-r--r-- | tools/ascat.nix | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tools/ascat.nix b/tools/ascat.nix index 700cb4e..142e0d9 100644 --- a/tools/ascat.nix +++ b/tools/ascat.nix @@ -1,17 +1,17 @@ -{bionix}: +{ bionix }: with bionix; { - app = pkgs.callPackage ./ascat-app.nix {}; + app = pkgs.callPackage ./ascat-app.nix { }; /* Generate GC correction file for ascatNGS. - Type: gccorrect :: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC) + Type: gccorrect :: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC) */ gccorrect = callBionixE ./ascat-gccorrect.nix; /* Call CNVs using ascatNGS. Gender is a string as per ascatNGS docs (e.g., "XX"). - Type: callCNV :: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs + Type: callCNV :: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs */ callCNV = callBionixE ./ascat-callCNV.nix; } |