diff options
| author | Justin Bedo <cu@cua0.org> | 2022-02-09 12:13:59 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2022-02-09 12:13:59 +1100 |
| commit | 96c9a8880a690d2d8058663a805c3b363e416a8d (patch) | |
| tree | ac5d8238615c516146000ebca1854197a1cc6ffd /tools/bwa-mem2.nix | |
| parent | ab3db7be630e047b6620c9c3a797116437d7a680 (diff) | |
don't strip store paths from bams
Due to BAM compression attempting to strip store
paths is a waste of time.
Diffstat (limited to 'tools/bwa-mem2.nix')
| -rw-r--r-- | tools/bwa-mem2.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/bwa-mem2.nix b/tools/bwa-mem2.nix index e6237f0..1c98167 100644 --- a/tools/bwa-mem2.nix +++ b/tools/bwa-mem2.nix @@ -40,4 +40,5 @@ stage { ''; passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.name { }; }; passthru.multicore = true; + stripStorePaths = !bamOutput; } |