diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/cnvkit-batch.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/cnvkit-batch.nix')
-rw-r--r-- | tools/cnvkit-batch.nix | 15 |
1 files changed, 8 insertions, 7 deletions
diff --git a/tools/cnvkit-batch.nix b/tools/cnvkit-batch.nix index 113e0c9..7f7893f 100644 --- a/tools/cnvkit-batch.nix +++ b/tools/cnvkit-batch.nix @@ -1,17 +1,18 @@ -{bionix -,targets ? null -,annotations ? null -,flags ? null -,indexAttrs ? {}}: +{ bionix +, targets ? null +, annotations ? null +, flags ? null +, indexAttrs ? { } +}: -{normals ? [], tumours}: +{ normals ? [ ], tumours }: with bionix; with lib; with types; let - getref = f: matchFiletype "cnvkit-batch" { bam = {ref, ...}: ref; } f; + getref = matchFiletype "cnvkit-batch" { bam = { ref, ... }: ref; }; refs = map getref normals ++ map getref tumours; ref = head refs; sorted = matchFileSorting "cnvkit-batch" { coord = _: true; }; |