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| author | Justin Bedo <cu@cua0.org> | 2019-03-22 10:15:10 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-03-22 10:15:10 +1100 |
| commit | 9ad5160a25975c7457c002a0207820451302fc2d (patch) | |
| tree | 2ff86470a15e6b0f425852133c4981344d712d78 /tools/cnvkit.nix | |
| parent | 72e2b9e39cfb6a78b6b94864d6acfebf7b371376 (diff) | |
cnvkit: add scatter plots
Diffstat (limited to 'tools/cnvkit.nix')
| -rw-r--r-- | tools/cnvkit.nix | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/tools/cnvkit.nix b/tools/cnvkit.nix index 2259bec..73f4329 100644 --- a/tools/cnvkit.nix +++ b/tools/cnvkit.nix @@ -9,4 +9,9 @@ with bionix; Type: callCNV :: {targets :: target file, annotations :: annotation file, ...} -> {normals :: [bam], tumours :: [bam]} -> CNVs */ callCNV = callBionixE ./cnvkit-batch.nix; + + /* Scatter plot from CNV calls + Type: scatterPlot :: {} -> CNVs -> PDF + */ + scatterPlot = callBionixE ./cnvkit-scatter.nix; } |