diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/gridss-assemble.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/gridss-assemble.nix')
-rw-r--r-- | tools/gridss-assemble.nix | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 1a46eae..15e5ca6 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -1,12 +1,12 @@ { bionix -, bwaIndexAttrs ? {} -, faidxAttrs ? {} -, indexAttrs ? {} -, collectMetricsAttrs ? {} +, bwaIndexAttrs ? { } +, faidxAttrs ? { } +, indexAttrs ? { } +, collectMetricsAttrs ? { } , flags ? null , config ? null , heapSize ? "31g" -, workdirs ? [] +, workdirs ? [ ] , jobIndex ? null , jobNodes ? null }: @@ -36,7 +36,7 @@ let in assert (all sorted inputs); -assert (homoRef); +assert homoRef; stage rec { name = "gridss-assemble"; @@ -70,6 +70,6 @@ stage rec { touch $out cp -r out.gridss.working $work ''; - passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; + passthru.filetype = filetype.bam { inherit ref; sorting = sort.none { }; }; passthru.multicore = true; } |