diff options
| author | Justin Bedo <cu@cua0.org> | 2018-12-11 14:11:21 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-12-11 14:11:21 +1100 |
| commit | d79fc6785f2b8714fa2762bd07a9a9f937bf4513 (patch) | |
| tree | c9ff02450c40bd27d4a424e572f2928ac5c2ccc7 /tools/gridss-assemble.nix | |
| parent | 2a8c14c6fabc914b8cc173313a685f2b94a26aea (diff) | |
gridss: fix softClipsToSplitReads after assembly
Diffstat (limited to 'tools/gridss-assemble.nix')
| -rw-r--r-- | tools/gridss-assemble.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 847830a..a8124e0 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -55,5 +55,5 @@ stdenv.mkDerivation rec { WORKING_DIR=$TMPDIR/ \ TMP_DIR=$TMPDIR/ ''; - passthru.filetype = filetype.bam { ref = ref; sorting = sort.coord {}; }; + passthru.filetype = filetype.bam { ref = ref; sorting = sort.name {}; }; } |