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| author | Justin Bedo <cu@cua0.org> | 2018-10-04 14:20:31 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-10-04 14:20:31 +1000 |
| commit | b51c2989b0d354ab96077c6af559dc20c026d42f (patch) | |
| tree | 90b67ba7164214a0c0a4fba40f55c9bc4182e7d8 /tools/gridss-callVariants.nix | |
| parent | 30d47b54b1e1ca63fb4a3bce26cc51a7b6017e23 (diff) | |
Refactor references
Diffstat (limited to 'tools/gridss-callVariants.nix')
| -rw-r--r-- | tools/gridss-callVariants.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-callVariants.nix b/tools/gridss-callVariants.nix index e431560..c313c3f 100644 --- a/tools/gridss-callVariants.nix +++ b/tools/gridss-callVariants.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { sha256 = "01srl3qvv060whqg1y1fpxjc5cwga5wscs1bmf1v3z87dignra7k"; }; buildCommand = '' - ln -s ${ref} ref.fa + ln -s ${ref.seq} ref.fa ln -s ${bionix.samtools.faidx faidxAttrs ref} ref.fa.fai for f in ${bionix.bwa.index bwaIndexAttrs ref}/*; do ln -s $f |