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author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-15 17:25:53 +1100 |
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committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-15 17:25:53 +1100 |
commit | 3c568bacd397a3ddcb203811f7fa5a1f8af760a3 (patch) | |
tree | 65cd429a3ac08b9f04703a7da0bfa76ecebb36ef /tools/gridss-identifyVariants.nix | |
parent | 01401aaee74dac39e0502688654ef02771a88cd7 (diff) |
Fix up gridss config file.
Diffstat (limited to 'tools/gridss-identifyVariants.nix')
-rw-r--r-- | tools/gridss-identifyVariants.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-identifyVariants.nix b/tools/gridss-identifyVariants.nix index 87d418b..a53fcb7 100644 --- a/tools/gridss-identifyVariants.nix +++ b/tools/gridss-identifyVariants.nix @@ -61,7 +61,7 @@ stdenv.mkDerivation rec { ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \ ASSEMBLY=${assembly} \ OUTPUT_VCF=out.vcf \ - ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \ + ${optionalString (config != null) ("CONFIGURATION_FILE=" + bionix.gridss.gridssConfig config)} \ WORKING_DIR=$TMPDIR/ \ TMP_DIR=$TMPDIR/ |