diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
---|---|---|
committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/gridss-softClipsToSplitReads.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
-rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 93d02df..ef53322 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -1,6 +1,6 @@ { bionix -, bwaIndexAttrs ? {} -, faidxAttrs ? {} +, bwaIndexAttrs ? { } +, faidxAttrs ? { } , alignerStreaming ? false , flags ? null , config ? null @@ -37,7 +37,7 @@ stage rec { ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES \ ${optionalString (flags != null) flags} - ''; - passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; + ''; + passthru.filetype = filetype.bam { inherit ref; sorting = sort.none { }; }; passthru.multicore = true; } |