diff options
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 93d02df..ef53322 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -1,6 +1,6 @@ { bionix -, bwaIndexAttrs ? {} -, faidxAttrs ? {} +, bwaIndexAttrs ? { } +, faidxAttrs ? { } , alignerStreaming ? false , flags ? null , config ? null @@ -37,7 +37,7 @@ stage rec { ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES \ ${optionalString (flags != null) flags} - ''; - passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; + ''; + passthru.filetype = filetype.bam { inherit ref; sorting = sort.none { }; }; passthru.multicore = true; } |