diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/kallisto-quant.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/kallisto-quant.nix')
-rw-r--r-- | tools/kallisto-quant.nix | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/tools/kallisto-quant.nix b/tools/kallisto-quant.nix index 3efeaaa..b7481d8 100644 --- a/tools/kallisto-quant.nix +++ b/tools/kallisto-quant.nix @@ -1,5 +1,5 @@ -{bionix -, indexFlags ? {} +{ bionix +, indexFlags ? { } , bias ? false , bootstrapSamples ? 0 , seed ? 42 @@ -10,7 +10,8 @@ , rfStranded ? false , fragmentLength ? null , fragmentSD ? null -, ref}: +, ref +}: with bionix; with lib; @@ -21,7 +22,7 @@ inputs: let inherit (bionix.types) matchFiletype'; - isFastQ = matchFiletype' "kallisto-quant" {fq = _: true; gz = isFastQ; }; + isFastQ = matchFiletype' "kallisto-quant" { fq = _: true; gz = isFastQ; }; empty = ./kallisto-quant-empty.h5; @@ -45,7 +46,7 @@ let in -assert (all (x: isFastQ (x.filetype)) inputs); +assert (all (x: isFastQ x.filetype) inputs); stage { name = "kallisto-quant"; |