diff options
Diffstat (limited to 'tools/kallisto-quant.nix')
-rw-r--r-- | tools/kallisto-quant.nix | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/tools/kallisto-quant.nix b/tools/kallisto-quant.nix index 3efeaaa..b7481d8 100644 --- a/tools/kallisto-quant.nix +++ b/tools/kallisto-quant.nix @@ -1,5 +1,5 @@ -{bionix -, indexFlags ? {} +{ bionix +, indexFlags ? { } , bias ? false , bootstrapSamples ? 0 , seed ? 42 @@ -10,7 +10,8 @@ , rfStranded ? false , fragmentLength ? null , fragmentSD ? null -, ref}: +, ref +}: with bionix; with lib; @@ -21,7 +22,7 @@ inputs: let inherit (bionix.types) matchFiletype'; - isFastQ = matchFiletype' "kallisto-quant" {fq = _: true; gz = isFastQ; }; + isFastQ = matchFiletype' "kallisto-quant" { fq = _: true; gz = isFastQ; }; empty = ./kallisto-quant-empty.h5; @@ -45,7 +46,7 @@ let in -assert (all (x: isFastQ (x.filetype)) inputs); +assert (all (x: isFastQ x.filetype) inputs); stage { name = "kallisto-quant"; |