diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/mutect-call.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/mutect-call.nix')
-rw-r--r-- | tools/mutect-call.nix | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/tools/mutect-call.nix b/tools/mutect-call.nix index e98ba4b..52c1e1d 100644 --- a/tools/mutect-call.nix +++ b/tools/mutect-call.nix @@ -1,21 +1,22 @@ -{bionix +{ bionix , cosmic -, dbsnp}: +, dbsnp +}: with bionix; with lib; let inherit (types) matchFiletype; - getVCFref = matchFiletype "mutect-call" {vcf = {ref}: ref;}; - getBAMref = matchFiletype "mutect-call" {bam = {ref, ...}: ref;}; + getVCFref = matchFiletype "mutect-call" { vcf = { ref }: ref; }; + getBAMref = matchFiletype "mutect-call" { bam = { ref, ... }: ref; }; refs = map getVCFref [ cosmic dbsnp ]; ref = head refs; in assert (length (unique refs) == 1); -{normal, tumour}: +{ normal, tumour }: assert (ref == getBAMref normal && ref == getBAMref tumour); |