diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/octopus.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/octopus.nix')
-rw-r--r-- | tools/octopus.nix | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/tools/octopus.nix b/tools/octopus.nix index 858d133..7c21758 100644 --- a/tools/octopus.nix +++ b/tools/octopus.nix @@ -4,12 +4,12 @@ with bionix; { /* Call variants for a population - Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> [bam] -> vcf + Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> [bam] -> vcf */ call = callBionixE ./octopus-call.nix; - + /* Call somatic variants - Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> { normal :: bam, tumours :: [bam] } -> vcf + Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> { normal :: bam, tumours :: [bam] } -> vcf */ callSomatic = callBionixE ./octopus-callSomatic.nix; } |