diff options
Diffstat (limited to 'tools/octopus.nix')
| -rw-r--r-- | tools/octopus.nix | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/tools/octopus.nix b/tools/octopus.nix index 858d133..7c21758 100644 --- a/tools/octopus.nix +++ b/tools/octopus.nix @@ -4,12 +4,12 @@ with bionix; { /* Call variants for a population - Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> [bam] -> vcf + Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> [bam] -> vcf */ call = callBionixE ./octopus-call.nix; - + /* Call somatic variants - Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> { normal :: bam, tumours :: [bam] } -> vcf + Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> { normal :: bam, tumours :: [bam] } -> vcf */ callSomatic = callBionixE ./octopus-callSomatic.nix; } |