diff options
author | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2021-10-29 17:39:01 +1100 |
commit | bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 (patch) | |
tree | 8719a280b56122017d46b582cd3da8547dd3f548 /tools/platypus-callVariants.nix | |
parent | ab809b8c77efdad9fb54d3591a0193a1cbe888d1 (diff) |
treewide reformatting and simplification
- simplify with statix
- reformat with nixpkgs-fmt
Diffstat (limited to 'tools/platypus-callVariants.nix')
-rw-r--r-- | tools/platypus-callVariants.nix | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index bb0faf1..59a224b 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -1,6 +1,6 @@ { bionix -, indexAttrs ? {} -, bamIndexAttrs ? {} +, indexAttrs ? { } +, bamIndexAttrs ? { } , flags ? null }: @@ -13,7 +13,7 @@ with types; let filename = path: last (splitString "/" path); - getref = f: matchFiletype "platypus-callVariants" { bam = {ref, ...}: ref; } f; + getref = matchFiletype "platypus-callVariants" { bam = { ref, ... }: ref; }; refs = map getref inputs; ref = head refs; in @@ -38,6 +38,6 @@ stage { # Remove timestamps from output sed -i '/^##fileDate/d' $out ''; - passthru.filetype = filetype.vcf {ref = ref;}; + passthru.filetype = filetype.vcf { inherit ref; }; passthru.multicore = true; } |