diff options
Diffstat (limited to 'tools/platypus-callVariants.nix')
-rw-r--r-- | tools/platypus-callVariants.nix | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index bb0faf1..59a224b 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -1,6 +1,6 @@ { bionix -, indexAttrs ? {} -, bamIndexAttrs ? {} +, indexAttrs ? { } +, bamIndexAttrs ? { } , flags ? null }: @@ -13,7 +13,7 @@ with types; let filename = path: last (splitString "/" path); - getref = f: matchFiletype "platypus-callVariants" { bam = {ref, ...}: ref; } f; + getref = matchFiletype "platypus-callVariants" { bam = { ref, ... }: ref; }; refs = map getref inputs; ref = head refs; in @@ -38,6 +38,6 @@ stage { # Remove timestamps from output sed -i '/^##fileDate/d' $out ''; - passthru.filetype = filetype.vcf {ref = ref;}; + passthru.filetype = filetype.vcf { inherit ref; }; passthru.multicore = true; } |