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| author | Justin Bedo <cu@cua0.org> | 2019-04-17 19:06:00 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-04-17 19:06:00 +1000 |
| commit | 0c09091762accf8716ef7853dded34e1c86497aa (patch) | |
| tree | 55c7d1a10659ae31935c81bf8b46000c0af204a4 /tools/snap.nix | |
| parent | 1996a2de345755b72027481e72ca3c2402bebf8d (diff) | |
snap: init
Diffstat (limited to 'tools/snap.nix')
| -rw-r--r-- | tools/snap.nix | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/tools/snap.nix b/tools/snap.nix new file mode 100644 index 0000000..851c51a --- /dev/null +++ b/tools/snap.nix @@ -0,0 +1,17 @@ +{ bionix }: + +with bionix; + +rec { + app = pkgs.callPackage ./snap-app.nix {}; + + /* Align reads against a reference + Type: snap :: {ref :: fasta, bamOutput :: bool, ...} -> {input1, input2} -> bam/sam + */ + align = callBionixE ./snap-align.nix; + + /* Creates an reference index for SNAP + Type: index :: {...} -> fasta -> SNAP index + */ + index = callBionixE ./snap-index.nix; +} |