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| author | Justin Bedo <cu@cua0.org> | 2018-10-04 14:20:31 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-10-04 14:20:31 +1000 |
| commit | b51c2989b0d354ab96077c6af559dc20c026d42f (patch) | |
| tree | 90b67ba7164214a0c0a4fba40f55c9bc4182e7d8 /tools/strelka-call.nix | |
| parent | 30d47b54b1e1ca63fb4a3bce26cc51a7b6017e23 (diff) | |
Refactor references
Diffstat (limited to 'tools/strelka-call.nix')
| -rw-r--r-- | tools/strelka-call.nix | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tools/strelka-call.nix b/tools/strelka-call.nix index e7fbb58..ecdea84 100644 --- a/tools/strelka-call.nix +++ b/tools/strelka-call.nix @@ -19,8 +19,8 @@ in stdenv.mkDerivation { name = "strelka"; buildInputs = [ strelka ]; buildCommand = '' - ln -s ${ref} ref.fa - ln -s ${bionix.samtools.faidx indexAttrs ref} ref.fa.fai + ln -s ${ref.seq} ref.fa + ln -s ${bionix.samtools.faidx indexAttrs ref.seq} ref.fa.fai ${concatMapStringsSep "\n" (p: "ln -s ${p} ${filename p}.bam") inputs} ${concatMapStringsSep "\n" (p: "ln -s ${bionix.samtools.index bamIndexAttrs p} ${filename p}.bai") inputs} |