diff options
Diffstat (limited to 'tools/strelka-call.nix')
| -rw-r--r-- | tools/strelka-call.nix | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tools/strelka-call.nix b/tools/strelka-call.nix index e7fbb58..ecdea84 100644 --- a/tools/strelka-call.nix +++ b/tools/strelka-call.nix @@ -19,8 +19,8 @@ in stdenv.mkDerivation { name = "strelka"; buildInputs = [ strelka ]; buildCommand = '' - ln -s ${ref} ref.fa - ln -s ${bionix.samtools.faidx indexAttrs ref} ref.fa.fai + ln -s ${ref.seq} ref.fa + ln -s ${bionix.samtools.faidx indexAttrs ref.seq} ref.fa.fai ${concatMapStringsSep "\n" (p: "ln -s ${p} ${filename p}.bam") inputs} ${concatMapStringsSep "\n" (p: "ln -s ${bionix.samtools.index bamIndexAttrs p} ${filename p}.bai") inputs} |