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authorJustin Bedo <cu@cua0.org>2019-03-06 13:18:41 +1100
committerJustin Bedo <cu@cua0.org>2019-03-06 13:18:41 +1100
commit1ff9422ec0ab086a97c4acab5c8f4d15c2026172 (patch)
treee30d643b4750e23478ccc7388353e8ca491c4c2f /tools
parenta86ef4eda927c47791dc0c25852c13ea622f809b (diff)
api docs: init bowtie
Diffstat (limited to 'tools')
-rw-r--r--tools/bowtie.nix7
1 files changed, 7 insertions, 0 deletions
diff --git a/tools/bowtie.nix b/tools/bowtie.nix
index a4439d3..df97d36 100644
--- a/tools/bowtie.nix
+++ b/tools/bowtie.nix
@@ -3,6 +3,13 @@
with bionix;
{
+ /* Align a sequence against a reference
+ Type: align :: {ref :: fasta, bamOutput :: bool, ...} -> {input1 :: fastq, input2 :: fastq} -> bam/sam
+ */
align = callBionixE ./bowtie-align.nix;
+
+ /* Create a Bowtie index
+ Type: index :: {seed :: int, ...} -> fasta -> index
+ */
index = callBionixE ./bowtie-index.nix;
}