diff options
| author | Justin Bedo <cu@cua0.org> | 2019-03-06 13:28:41 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-03-06 13:33:16 +1100 |
| commit | abb7760edbc301256db6fc50b5fd475175bd7606 (patch) | |
| tree | e370320aa11919ac87a4b276224d6f9ac687148f /tools | |
| parent | be9238d8266682925ae4ad4d291621c03ac38dfd (diff) | |
api docs: init CNVkit
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/cnvkit.nix | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/tools/cnvkit.nix b/tools/cnvkit.nix index 610b18c..2259bec 100644 --- a/tools/cnvkit.nix +++ b/tools/cnvkit.nix @@ -3,6 +3,10 @@ with bionix; { -app = lib.callPackageWith (pkgs // pkgs.pythonPackages) ./cnvkit-app.nix {}; + app = lib.callPackageWith (pkgs // pkgs.pythonPackages) ./cnvkit-app.nix {}; + + /* Call CNVs + Type: callCNV :: {targets :: target file, annotations :: annotation file, ...} -> {normals :: [bam], tumours :: [bam]} -> CNVs + */ callCNV = callBionixE ./cnvkit-batch.nix; } |