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-rw-r--r--tools/cnvkit.nix6
1 files changed, 5 insertions, 1 deletions
diff --git a/tools/cnvkit.nix b/tools/cnvkit.nix
index 610b18c..2259bec 100644
--- a/tools/cnvkit.nix
+++ b/tools/cnvkit.nix
@@ -3,6 +3,10 @@
with bionix;
{
-app = lib.callPackageWith (pkgs // pkgs.pythonPackages) ./cnvkit-app.nix {};
+ app = lib.callPackageWith (pkgs // pkgs.pythonPackages) ./cnvkit-app.nix {};
+
+ /* Call CNVs
+ Type: callCNV :: {targets :: target file, annotations :: annotation file, ...} -> {normals :: [bam], tumours :: [bam]} -> CNVs
+ */
callCNV = callBionixE ./cnvkit-batch.nix;
}