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| -rw-r--r-- | references.bib | 14 | ||||
| -rw-r--r-- | slides.tex | 18 |
2 files changed, 14 insertions, 18 deletions
diff --git a/references.bib b/references.bib index 2ec514c..3d4075f 100644 --- a/references.bib +++ b/references.bib @@ -561,4 +561,16 @@ title = {Supporting data for "Unifying package managers, workflow engines, and publisher = {GigaScience Database}, year = {2020}, copyright = {Creative Commons Zero v1.0 Universal} -}
\ No newline at end of file +} +@article{Bed2020, + doi = {10.1093/gigascience/giaa121}, + url = {https://doi.org/10.1093/gigascience/giaa121}, + year = {2020}, + month = nov, + publisher = {Oxford University Press ({OUP})}, + volume = {9}, + number = {11}, + author = {Justin Bed{\H{o}} and Leon Di~Stefano and Anthony T Papenfuss}, + title = {Unifying package managers, workflow engines, and containers: Computational reproducibility with {BioNix}}, + journal = {{GigaScience}} +} @@ -180,23 +180,6 @@ \end{frame} \begin{frame} - \frametitle{HPC execution} - \begin{minipage}{.3\textwidth} - \begin{overprint} - \onslide<1>\includegraphics[width=\linewidth]{slurm} - \onslide<2>\includegraphics[width=\linewidth]{cluster} - \end{overprint} - \end{minipage} - \begin{minipage}{.68\textwidth} - \begin{enumerate} - \item Easy implementation due to derivation overriding pattern from Nix - \item Call \Verb|(bionix.slurm \{ ... \}).samtools.sort| instead of \Verb|bionix.samtools.sort| - \onslide<2>\item Easy to shift previous example to HPC execution - \end{enumerate} - \end{minipage} -\end{frame} - -\begin{frame} \frametitle{Stafford Fox Rare Cancer Project} \begin{enumerate} \item $\geq100$ WGS/WES samples totalling 20 TiB of primary data @@ -290,6 +273,7 @@ \item BioNix provides a high degree of reproducibility \item Obviates the need for multiple technologies (i.e., package managers and containers) \item Workflows as function composition, simplifying specification + \item BioNix~\autocite{Bed2020} available at \url{https://github.com/PapenfussLab/BioNix} \end{enumerate} \end{frame} |