diff options
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 0 insertions, 1 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index a6ea163..0f6a441 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -54,7 +54,6 @@ let ln -s ${tnpairResult.variants} $out/strelka mkdir $out/alignments ln -s ${gridss.callVariants {} (with tnpairResult.alignments; [tumour])} $out/gridss - ln -s ${gridss.call (with tnpairResult.alignments; [tumour])} $out/gridss2 ln -s ${samtools.merge {} [tnpairResult.alignments.tumour tnpairResult.alignments.normal]} $out/alignments/merged.bam ln -s ${samtools.view { outfmt = types.toCram; } (tnpairResult.alignments.tumour)} $out/alignments/${tnpair.tumour.name}.cram ln -s ${samtools.view { outfmt = types.toCram; } (tnpairResult.alignments.normal)} $out/alignments/${tnpair.normal.name}.cram |