diff options
| -rw-r--r-- | tools/gridss-annotateVariants.nix | 1 | ||||
| -rw-r--r-- | tools/gridss-assemble.nix | 1 |
2 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-annotateVariants.nix b/tools/gridss-annotateVariants.nix index 655b268..df3b1bd 100644 --- a/tools/gridss-annotateVariants.nix +++ b/tools/gridss-annotateVariants.nix @@ -55,6 +55,7 @@ stdenv.mkDerivation rec { name = "gridss-identifyVariants"; buildInputs = [ jre ]; buildCommand = '' + TMPDIR=$(pwd) ln -s ${ref} ref.fa ln -s ${bionix.samtools.faidx faidxAttrs ref} ref.fa.fai for f in ${bionix.bwa.index bwaIndexAttrs ref}/*; do diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 847830a..b24f742 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -39,6 +39,7 @@ stdenv.mkDerivation rec { name = "gridss-assemble"; buildInputs = [ jre bwa ]; buildCommand = '' + TMPDIR=$(pwd) ln -s ${ref} ref.fa ln -s ${bionix.samtools.faidx faidxAttrs ref} ref.fa.fai for f in ${bionix.bwa.index bwaIndexAttrs ref}/*; do |