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| -rw-r--r-- | examples/README.md | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/examples/README.md b/examples/README.md index 1689709..b12c172 100644 --- a/examples/README.md +++ b/examples/README.md @@ -3,7 +3,8 @@ This directory has a few example workflows in bionix along with example data. A basic workflow is defined in `call.nix`, and an example of applying it to the sample data is in `default.nix`. To build the -`default.nix` workflow, run ```nix build``` from this directory. +`default.nix` workflow, run ```nix build -I bionix=../``` from this directory. +Note that the location of BioNix ## NextFlow and WDL translations @@ -12,12 +13,12 @@ from the NextFlow and WDL documentation respectively. The NextFlow translated example does not come with example data. It can be built with ``` -nix build -f nextflow-example1.nix --arg input /path/to/sample.fa +nix build -f nextflow-example1.nix -I bionix=../.. --arg input /path/to/sample.fa ``` The WDL example requires no extra data and can be built with ``` -nix build -f wdl-scatter-gather.nix +nix build -f wdl-scatter-gather.nix -I bionix=../.. ``` ## Example script wrapper |