diff options
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 6 |
1 files changed, 1 insertions, 5 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index b35d41d..5fce894 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -37,9 +37,5 @@ stdenv.mkDerivation rec { ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES ''; - passthru.filetype = - if alignerStreaming then - filetype.bam { ref = ref; sort = sorting.none {}; } - else - input.filetype; + passthru.filetype = filetype.bam { ref = ref; sort = sorting.none {}; } } |