diff options
| -rw-r--r-- | lib/references.nix | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/lib/references.nix b/lib/references.nix index 9cb26a1..a55637f 100644 --- a/lib/references.nix +++ b/lib/references.nix @@ -65,6 +65,22 @@ rec { buildCommand = "gunzip < $src > $out"; passthru.filetype = filetype.fa {}; }; + gtf = stage { + name = "ensembl-grch38-gtf-${version}"; + src = pkgs.fetchurl { + url = "ftp://ftp.ensembl.org/pub/release-${version}/gtf/homo_sapiens/Homo_sapiens.GRCh38.${version}.gtf.gz"; + sha256 = "124swjp6bhhl0wjhfq16675s3fqyny293mhrjwvzkiybpgfwzpi7"; + }; + buildCommand = "gunzip < $src > $out"; + }; + gff3 = stage { + name = "ensembl-grch38-gff-${version}"; + src = pkgs.fetchurl { + url = "ftp://ftp.ensembl.org/pub/release-${version}/gff3/homo_sapiens/Homo_sapiens.GRCh38.${version}.gff3.gz"; + sha256 = "0r2npkpq7z0dd74fl8q3kzv0860chfx3v319z6libl5qy9rspdmi"; + }; + buildCommand = "gunzip < $src > $out"; + }; }; snpeff = { db = pkgs.stdenv.mkDerivation rec { @@ -136,6 +152,22 @@ rec { buildCommand = "gunzip < $src > $out"; passthru.filetype = filetype.fa {}; }; + gtf = stage { + name = "ensembl-grcm38-gtf-${version}"; + src = pkgs.fetchurl { + url = "ftp://ftp.ensembl.org/pub/release-${version}/gtf/mus_musculus/Mus_musculus.GRCm38.${version}.gtf.gz"; + sha256 = "0i61jq5i5bcini5nxqxxp3rnz2xzgychvzdn0k451f5rv053lp3v"; + }; + buildCommand = "gunzip < $src > $out"; + }; + gff3 = stage { + name = "ensembl-grcm38-gff-${version}"; + src = pkgs.fetchurl { + url = "ftp://ftp.ensembl.org/pub/release-${version}/gff3/mus_musculus/Mus_musculus.GRCm38.${version}.gff3.gz"; + sha256 = "15fmdpx6g96fygwhs10jwrb2q5p9y64bc3d4clg856k57qzzgprg"; + }; + buildCommand = "gunzip < $src > $out"; + }; }; }; |