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-rw-r--r--examples/ex-tnpair/tnpair.nix1
1 files changed, 1 insertions, 0 deletions
diff --git a/examples/ex-tnpair/tnpair.nix b/examples/ex-tnpair/tnpair.nix
index 70f5514..9e6befe 100644
--- a/examples/ex-tnpair/tnpair.nix
+++ b/examples/ex-tnpair/tnpair.nix
@@ -12,6 +12,7 @@ let
preprocess = s: pipe s [
fetch
(align { preset = "sr"; ref = ref.grch38.seq; flags = "-R'@RG\\tID:${s.type}\\tSM:${s.type}'"; })
+ (sort { nameSort = true; })
(fixmate {})
(sort { })
(markdup { })