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Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index ae88549..38eb509 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -72,6 +72,7 @@ let "strelka.snvs.vcf" = tnpairResult.variants.snvs; "strelka.gl.vcf" = tnpairResult.glvariants; delly = delly.call {} (with tnpairResult.alignments; [normal tumour]); + lumpy = lumpy.call {} (with tnpairResult.alignments; [normal tumour]); manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; }); mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;}); mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;}); |