diff options
| author | Justin Bedo <cu@cua0.org> | 2019-12-18 09:54:54 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-12-18 09:56:28 +1100 |
| commit | 8b97c7e8f685dd3c402e172ea15ef9716b529c8e (patch) | |
| tree | 3f42658a22d79800e7597e30f6f0c44edac29147 /test-tnpair.nix | |
| parent | 123d38340bd38524f0c53a52ccb3d57d43e6fb6d (diff) | |
lumpy: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index ae88549..38eb509 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -72,6 +72,7 @@ let "strelka.snvs.vcf" = tnpairResult.variants.snvs; "strelka.gl.vcf" = tnpairResult.glvariants; delly = delly.call {} (with tnpairResult.alignments; [normal tumour]); + lumpy = lumpy.call {} (with tnpairResult.alignments; [normal tumour]); manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; }); mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;}); mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;}); |