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Diffstat (limited to 'tools/gridss-assemble.nix')
| -rw-r--r-- | tools/gridss-assemble.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 27bbe32..14f39c8 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -48,6 +48,7 @@ stage rec { ${concatMapStringsSep "\n" linkInput inputs} java -Xmx${heapSize} -Dsamjdk.create_index=true \ -cp ${bionix.gridss.jar} gridss.AssembleBreakends \ + VERBOSITY=WARNING \ REFERENCE_SEQUENCE=ref.fa \ ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \ WORKER_THREADS=$NIX_BUILD_CORES \ |