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| author | Justin Bedo <cu@cua0.org> | 2019-03-28 13:40:31 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-03-28 13:40:31 +1100 |
| commit | dbbfc5655b840e9cd1d10993b411376ec0a90135 (patch) | |
| tree | 17f3a63cd9ab7c6407eeb6b88ffe0488b9932deb /tools/gridss-assemble.nix | |
| parent | 1d01a7faf089bc4ce221a4460abf613dd279e2a7 (diff) | |
gridss: less chatty logs
Diffstat (limited to 'tools/gridss-assemble.nix')
| -rw-r--r-- | tools/gridss-assemble.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 27bbe32..14f39c8 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -48,6 +48,7 @@ stage rec { ${concatMapStringsSep "\n" linkInput inputs} java -Xmx${heapSize} -Dsamjdk.create_index=true \ -cp ${bionix.gridss.jar} gridss.AssembleBreakends \ + VERBOSITY=WARNING \ REFERENCE_SEQUENCE=ref.fa \ ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \ WORKER_THREADS=$NIX_BUILD_CORES \ |