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-rw-r--r--tools/hisat2-index.nix2
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/hisat2-index.nix b/tools/hisat2-index.nix
index 82935eb..ffdb4ed 100644
--- a/tools/hisat2-index.nix
+++ b/tools/hisat2-index.nix
@@ -21,7 +21,7 @@ stage {
mkdir $out
hisat2-build -p $NIX_BUILD_CORES ${optionalString (flags != null) flags} \
${optionalString (gtf != null) "--ss ${hisat2.extractSpliceSites extractSpliceSitesAttrs gtf} --exon ${hisat2.extractExons extractExonsAttrs gtf}"} \
- ref.fa $out/
+ ref.fa $out/index
'';
passthru.multicore = true;
}